Browsing by Author "Lyimo, Samson"

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Draft genome sequences of six Brucella melitensis isolates collected from humans and livestock in Tanzania
(American Society for Microbiology, 2025-06) Middlebrook, Earl; Hugho, Ephrasia; Lyimo, Beatus; Mathew, Coletha; Mayenga, Charles; Li, Lingling; Amani, Nelson; Lukambagire, AbdulHamid; Kumburu, Happiness; Munuo, Lidia; Lyimo, Samson; Shirima, Gabriel; Kazwala, Rudovick; Byukusenge, Maurice; Mmbaga, Blandina; Makondo, Zachariah; Kapur, Vivek; Buza, Joram; Fair, Jeanne; Katani, Robab
We present genome assemblies of six Brucella melitensis strains isolated from goats and humans in Tanzania’s Kagera region. These sequences provide insight into circulating Brucella strains in Tanzania and East Africa. These data will support future comparative genomics, epidemiological investigations, and regional brucellosis control strategies.
Field vaccination of locally-owned cattle against malignant catarrhal fever under environmentally challenging conditions in Tanzania
(Elsevier, 2025-01-25) Bainbridge, Samuel; Mappi, Tauta; Cleaveland, Sarah; Chubwa, Choby; Davis, Alicia; Grant, Dawn; Kibona, Tito; Bwatota, Shedrack; Larsen, Freja; Lyimo, Samson; Mshana, Fadhili; Percival, Ann; Shirima, Gabriel; Mtili, Bakari; Musyangi, Felix; Tarimo, Rigobert; Lankester, Felix; Russell, George
Malignant catarrhal fever (MCF), caused by alcelaphine herpesvirus-1 (AIHV-1) transmitted from wildebeest, is a lethal cattle disease with significant impacts on East African pastoralists. Development of a live attenuated MCF vaccine has prompted research into its use in communities at risk. This study reports results from the first utilisation of the MCF vaccine in locally-owned cattle under field conditions. The study involved a primary two-dose course vaccination of 1634 cattle, followed a year later, by boost vaccination of 385 of these cattle. It aimed to: (a) evaluate the antibody response to a two-dose AlHV-1 primary vaccination course, including initial response, antibody levels after one year, and clinical events post-vaccination; (b) assess how factors like age, reproductive status, body condition, and breed influence the initial response; and (c) compare antibody responses to single- and two-dose booster protocols one year after primary vaccination. Analyses were carried out using linear mixed-effects models and paired t-tests. Clinical incidents were reported in 11/1634 cattle vaccinated during the primary course and in 0/385 cattle during the boost regimens. The primary vaccination resulted in a 9-fold increase in comparison to pre-vaccination antibody levels and the response was consistent across animals of different ages, reproductive statuses and body conditions. While antibody levels declined 11 months after primary vaccination, they remained high, and a single-dose booster vaccination was sufficient to elicit a strong immune response, with only marginal increases after a second booster. The study provides evidence of high immunogenicity and low incidences of clinical events of the vaccine in cattle across individual host factors and immunologically vulnerable groups, under prevailing environmental conditions. It also indicates the utility of a single-dose booster regimen. These findings will support progress towards commercial production and larger-scale adoption which could generate important benefits for the livelihoods, and sustainability of pastoral livestock systems.
Identification of Bacillus anthracis, Brucella spp., and Coxiella burnetii DNA signatures from bushmeat
(Springer Nature Limited, 2021-07-21) Katani, Robab; Schilling, Megan; Lyimo, Beatus; Eblate, Ernest; Martin, Andimile; Tonui, Triza; Cattadori, Isabella; Francesconi, Stephen; Estes, Anna; Rentsch, Dennis; Srinivasan, Sreenidhi; Lyimo, Samson; Munuo, Lidia; Tiambo, Christian; Stomeo, Francesca; Gwakisa, Paul; Mosha, Fausta; Hudson, Peter; Buza, Joram; Kapur, Vivek
Meat from wildlife species (bushmeat) represents a major source of dietary protein in low- and middle-income countries where humans and wildlife live in close proximity. Despite the occurrence of zoonotic pathogens in wildlife, their prevalence in bushmeat remains unknown. To assess the risk of exposure to major pathogens in bushmeat, a total of 3784 samples, both fresh and processed, were collected from three major regions in Tanzania during both rainy and dry seasons, and were screened by real-time PCR for the presence of DNA signatures of Bacillus anthracis (B. anthracis), Brucella spp. (Brucella) and Coxiella burnetii (Coxiella). The analysis identified DNA signatures of B. anthracis (0.48%), Brucella (0.9%), and Coxiella (0.66%) in a total of 77 samples. Highest prevalence rates of B. anthracis, Brucella, and Coxiella were observed in wildebeest (56%), dik-dik (50%), and impala (24%), respectively. Fresh samples, those collected during the rainy season, and samples from Selous or Serengeti had a greater relative risk of being positive. Microbiome characterization identified Firmicutes and Proteobacteria as the most abundant phyla. The results highlight and define potential risks of exposure to endemic wildlife diseases from bushmeat and the need for future investigations to address the public health and emerging infectious disease risks associated with bushmeat harvesting, trade, and consumption.
Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania
(Nature Publishing Group UK, 2019-12-02) Katani, Robab; Schilling, Megan; Lyimo, Beatus; Tonui, Triza; Cattadori, Isabella; Eblate, Ernest; Martin, Andimile; Estes, Anna; Buza, Teresia; Rentsch, Dennis; Davenpor, Karen; Hovde, Blake; Lyimo, Samson; Munuo, Lydia; Stomeo, Francesca; Tiambo, Christian; Radzio-Basu, Jessica; Mosha, Fausta; Hudson, Peter; Buza, Joram; Kapur, Vivek
Bushmeat, the meat and organs derived from wildlife species, is a common source of animal protein in the diets of those living in sub-Saharan Africa and is frequently associated with zoonotic spillover of dangerous pathogens. Given the frequent consumption of bushmeat in this region and the lack of knowledge about the microbial communities associated with this meat, the microbiome of 56 fresh and processed bushmeat samples ascertained from three districts in the Western Serengeti ecosystem in Tanzania was characterized using 16S rRNA metagenomic sequencing. The results show that the most abundant phyla present in bushmeat samples include Firmicutes (67.8%), Proteobacteria (18.4%), Cyanobacteria (8.9%), and Bacteroidetes (3.1%). Regardless of wildlife species, sample condition, season, or region, the microbiome is diverse across all samples, with no significant difference in alpha or beta diversity. The findings also suggest the presence of DNA signatures of potentially dangerous zoonotic pathogens, including those from the genus Bacillus, Brucella, Coxiella, and others, in bushmeat. Together, this investigation provides a better understanding of the microbiome associated with this major food source in samples collected from the Western Serengeti in Tanzania and highlights a need for future investigations on the potential health risks associated with the harvesting, trade, and consumption of bushmeat in Sub-Saharan Africa
Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania
(Scientific Reports, 2019-12-02) Katani, Robab; Schilling, Megan; Lyimo, Beatus; Tonui, Triza; Cattadori, Isabella; Eblate, Ernest; Martin, Andimile; Estes, Anna; Buza, Teresia; Rentsch, Dennis; Davenport, Karen; Hovde, Blake; Lyimo, Samson; Munuo, Lydia; Stomeo, Francesca; Tiambo, Christian; Radzio-Basu, Jessica; Mosha, Fausta; Hudson, Peter; Buza, Joram; Kapur, Vivek
Bushmeat, the meat and organs derived from wildlife species, is a common source of animal protein in the diets of those living in sub-Saharan Africa and is frequently associated with zoonotic spillover of dangerous pathogens. Given the frequent consumption of bushmeat in this region and the lack of knowledge about the microbial communities associated with this meat, the microbiome of 56 fresh and processed bushmeat samples ascertained from three districts in the Western Serengeti ecosystem in Tanzania was characterized using 16S rRNA metagenomic sequencing. The results show that the most abundant phyla present in bushmeat samples include Firmicutes (67.8%), Proteobacteria (18.4%), Cyanobacteria (8.9%), and Bacteroidetes (3.1%). Regardless of wildlife species, sample condition, season, or region, the microbiome is diverse across all samples, with no significant difference in alpha or beta diversity. The findings also suggest the presence of DNA signatures of potentially dangerous zoonotic pathogens, including those from the genus Bacillus, Brucella, Coxiella, and others, in bushmeat. Together, this investigation provides a better understanding of the microbiome associated with this major food source in samples collected from the Western Serengeti in Tanzania and highlights a need for future investigations on the potential health risks associated with the harvesting, trade, and consumption of bushmeat in Sub-Saharan Africa
Perception and Risk Factors Associated with Tuberculosis in the Manyara Region, Tanzania2
(MDPI, 2023-10-06) Masanga, Prudence; Paul, Sarapia; Mbelele, Peter; Daud, Peter; Liyoyo, Alphonce; Munuo, Lidia; Lyimo, Samson; Lyimo, Beatus; Srinivasan, Sreenidhi; Cattadori, Isabella; Katani, Robab; Kapur, Vivek; Mpagama, Stella; Buza, Joram
Tuberculosis (TB) results from infection with members of the Mycobacterium tuberculosis complex (MTBC) and represents a major global public health concern. We here sought to assess the perceptions of human and animal TB and the prevalence of circulating MTBCs lineages and associated risk factors through a cross-sectional survey of 335 individuals presenting with symptoms of pulmonary or extrapulmonary TB in the Manyara region of Tanzania. After the enrollment of participants, a questionnaire survey was conducted, samples were collected for bacterial culture, and real-time multiplex PCR was performed to differentiate amongst primary animal and human MTBC lineages. The results show poor TB awareness: 31.6% of the participants were not aware of human TB; 82.4% were unaware of animal TB and 95.2% lacked awareness of zoonotic TB (zTB) transmission. A total of 18 recovered specimens (5%; 95% CI: 3–8%) were positive by culture, all of which were typed as M. tuberculosis sensu stricto using a lineage-specific PCR assay. While no single risk factor was significantly associated with MTBC culture positivity, the survey revealed considerable self-reported high-risk practices for contracting zTB. Together, the results show that Manyara residents have poor knowledge of diseases caused by MTBCs and high evidence of risky practices for contracting zTB
Seroprevalence and risk factors for brucellosis amongst livestock and humans in a multi-herd ranch system in Kagera, Tanzania
(Frontiers, 2024-11-01) Lyimo, Beatus; Hugho, Ephrasia; Mathew, Coletha; Mayenga, Charles; Lyimo, Samson; Munuo, Lidia; Byukusenge, Maurice; Withall, Jodie; Mmbaga, Blandina; Bartlow, Andrew; Fair, Jeanne; Shirima, Gabriel; Cattadori, Isabella; Buza, Joram; Katani, Robab
Background: Brucellosis remains a significant health and economic challenge for livestock and humans globally. Despite its public health implications, the factors driving the endemic persistence of Brucella at the human-livestock interface in Tanzania remain poorly elucidated. This study aimed to identify the seroprevalence of Brucella infection in livestock and humans within a ranching system and determine associated risk factors for disease endemicity. Methods: A cross-sectional sero-epidemiological study was conducted in 2023 in Tanzania’s Karagwe District, involving 725 livestock (cattle, goats, sheep) from 10 herds and 112 humans from associated camps. Seroprevalence was assessed using competitive ELISA while epidemiological data were collected via questionnaires. Generalized Linear Models and Contrast Analysis were used to identify risk factors for infection. Results: Overall seroprevalence was 34% in livestock and 41% in humans. Goats exhibited the highest prevalence (69.2%), while cattle had the lowest (22.6%). Mixed-species herds (Odds Ratio, OR = 2.96, CI [1.90–4.60]) and small ruminants-only herds (OR = 6.54, CI [3.65–11.72]) showed a significantly higher risk of seropositivity compared to cattle-only herds. Older cattle (OR = 5.23, CI [2.70–10.10]) and lactating females (OR = 2.87, CI [1.78–4.63]) represented significant risks for brucellosis in livestock. In humans, close contact with animals (OR = 7.20, CI [1.97–36.31]) and handling animals during parturition or aborted fetuses (OR = 2.37, CI [1.01–5.58]) were significant risk factors. Notably, no spatial association was found in seroprevalence between herds and nearby human communities. Conclusion: The lack of spatial correlation between livestock and human seroprevalence suggests complex transmission dynamics, potentially involving endemic circulation in livestock and human infections from multiple sources of exposure to livestock. This study highlights the need for comprehensive zoonotic risk education and targeted intervention strategies. Further research is crucial to elucidate transmission pathways and improve Brucella infection control. This includes developing robust methods for identifying infective species and implementing effective strategies to mitigate Brucella infection in endemic regions.